bionty.Readout

class bionty.Readout(source=None, version=None, **kwargs)

Bases: Bionty

Experimental Factor.

1. Experimental Factor Ontology Edits of terms are coordinated and reviewed on: https://www.ebi.ac.uk/ols/ontologies/efo

Parameters:

• source – The key of the source in the local.yml versions file. Get all available databases with bionty.display_available_versions.

• version – The version of the ontology. Typically a date or an actual version. Get available versions with bionty.display_available_versions.

Also see: bionty.Bionty

Attributes

assay

Assays.

assay_by_instrument

Assays by instrument.

assay_by_molecule

Assays by molecule.

assay_by_sequencer

Assay by sequencer.

measurement

Measurement.

ontology

The Pronto Ontology object.

See: https://pronto.readthedocs.io/en/stable/api/pronto.Ontology.html

Methods

df()

Pandas DataFrame.

Return type:

DataFrame